Harun Raaj & AssociatesHarun Raaj & Associates

GST Compliance Journey · Step 1 of 2

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2Refunds
Indirect Tax Services

GST Compliance & Returns

GST

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SCOPEConfirmed in writing
TYPICAL TIMELINEOngoing
DOCS REQUIRED3 documents

Regulatory Framework

Ongoing GST compliance centres on the periodic return obligations under the Central Goods and Services Tax (CGST) Act, 2017.

Section 37 — GSTR-1: Every registered person must furnish details of outward supplies in FORM GSTR-1, as prescribed under Rule 59 of the CGST Rules, 2017, by the 11th of the month following the tax period (for monthly filers).

Section 39 — GSTR-3B: A summary return of outward and inward supplies, ITC availed, and tax payable/paid must be filed under Section 39, in the manner prescribed by Rule 61, either monthly or — for eligible small taxpayers — quarterly under the QRMP (Quarterly Return, Monthly Payment) scheme notified under Rule 61A, which permits taxpayers with aggregate turnover up to ₹5 crore in the preceding financial year to file GSTR-3B quarterly while paying tax monthly.

Section 44 — GSTR-9: An annual return in FORM GSTR-9 consolidating the year's outward/inward supplies and ITC, as prescribed under Rule 80.

Return-locking advisories: GSTN Advisory No. 606 introduced hard-locking of the auto-populated tax liability in GSTR-3B (sourced from GSTR-1/GSTR-1A/IFF), preventing manual edits to auto-drafted figures; GSTN Advisory No. 624 extended this to auto-locking of ITC as auto-populated in GSTR-3B from GSTR-2B, restricting manual overrides. Both advisories require discrepancies to be corrected at source — via GSTR-1A (amendment) or ITC reversal/reclaim in GSTR-3B — rather than through direct edits at the summary-return stage.

Late filing of any of these returns attracts late fees under Section 47 and interest on delayed tax payment under Section 50 of the CGST Act.

Overview

GST compliance and returns is the monthly machinery of a registered business's GST life — the outward supply statement, the monthly return and the input tax credit that together keep the business compliant. Under the CGST Act 2017, the outward supplies are reported in GSTR-1 under Section 37, the monthly return in GSTR-3B under Section 39, the credit position is reconciled with the auto-generated GSTR-2B under Section 38, and the annual return follows under Section 44. The late fee of Section 47 and the interest of Section 50 are the price of the calendar.

The compliance is a system, not a form. The invoices drive the outward supplies, the purchases drive the credit, and the returns must reconcile with both — the GSTR-1 with the invoices, the GSTR-3B with the GSTR-1 and the GSTR-2B, the credit with the eligible position. The businesses that run the system find the month-end is a review; those that run the forms find every month is a scramble and every difference a future finding.

The cost of a broken return cycle is the known arithmetic: the late fee under Section 47 for returns filed late, the interest under Section 50 for tax paid late, the credit that was never reconciled with the GSTR-2B, and the mismatches that surface at the audit as demand seeds. Each is a leak the system prevents.

This service is for registered businesses that want their GST returns run as a system. We manage the GSTR-1 and GSTR-3B cycle under Sections 37 and 39, reconcile the credit with the GSTR-2B under Section 38, handle the payments and the late-fee positions, prepare the annual return under Section 44, and keep the compliance calendar running so the GST life is routine.

How It Works

  1. 1

    Compliance Setup & Calendar

    We set up the return cycle and the compliance calendar for the business.

    Harun Raaj & Associates does this2-3 days
  2. 2

    GSTR-1 & GSTR-3B Cycle

    We prepare and file the outward supply statement and the monthly return under Sections 37 and 39.

    Harun Raaj & Associates does thisMonthly
  3. 3

    ITC Reconciliation

    We reconcile the credit with the GSTR-2B under Section 38 and the eligible position.

    Harun Raaj & Associates does thisMonthly
  4. 4

    Payments & Late Fee Management

    We manage the tax payments and the late-fee positions under Sections 47 and 50.

    Harun Raaj & Associates does thisMonthly
  5. 5

    Annual Return & Review

    We prepare the annual return under Section 44 and review the year's compliance.

    Harun Raaj & Associates does thisAnnual

Frequently Asked Questions

What is e-invoicing and who must generate it?
E-invoicing under Rule 48(4): B2B invoices, debit/credit notes, and export invoices must be generated on the Invoice Registration Portal (IRP) to obtain an IRN (Invoice Reference Number). Mandatory for taxpayers with aggregate turnover > ₹5 crore (from 1 August 2023). The QR code and IRN appear on the invoice; e-invoices auto-populate GSTR-1. Non-compliant invoices are not valid tax invoices — ITC on them can be denied to the recipient.
What is the GST e-way bill and when is it required?
E-way bill under Rule 138: required for movement of goods with value > ₹50,000 by road, rail, air, or vessel. Generated before movement begins on the e-way bill portal. Validity: 1 day per 100 km (minimum 1 day, extendable). Penalty for movement without e-way bill: ₹10,000 or tax due, whichever is higher (Section 129). Not required for exempt goods, goods transported by hand, and certain intra-state supplies below state threshold.
What is GST under reverse charge and who pays it?
Reverse Charge Mechanism under Section 9(3): specified goods and services where tax is payable by the recipient, not the supplier. Current categories: GTA services (5%), advocate services to business, import of services. RCM liability must be paid in cash — the electronic credit ledger cannot be used for RCM payment. The tax paid under RCM is available as ITC in the same month (subject to Section 17(5) blocks).
What is the GST audit threshold and who conducts it?
GSTR-9C (CA-certified reconciliation) is required for aggregate annual turnover > ₹5 crore. Below ₹5 crore, GSTR-9C is optional. The department conducts its own audits independently under Section 65 (departmental audit) and Section 66 (special audit by CA nominated by the Commissioner). Departmental audit: minimum 15 working days notice, duration up to 3 months, covers last 5 years.
How is GST on import of services handled?
Import of services is treated as inter-state supply (IGST) — the Indian recipient pays IGST under RCM (Section 5(3) IGST Act). This applies even if the recipient is unregistered — mandatory registration under Section 24(iv). IGST paid is available as ITC for registered businesses. For OIDAR services (cloud SaaS, streaming) from foreign providers: the overseas supplier registers on the GST portal and pays IGST directly, or the Indian recipient pays under RCM.

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